GNU.WIKI: The GNU/Linux Knowledge Base

  [HOME] [PHP Manual] [HowTo] [ABS] [MAN1] [MAN2] [MAN3] [MAN4] [MAN5] [MAN6] [MAN7] [MAN8] [MAN9]

  [0-9] [Aa] [Bb] [Cc] [Dd] [Ee] [Ff] [Gg] [Hh] [Ii] [Jj] [Kk] [Ll] [Mm] [Nn] [Oo] [Pp] [Qq] [Rr] [Ss] [Tt] [Uu] [Vv] [Ww] [Xx] [Yy] [Zz]


NAME

       gbrowse_syn_load_alignment_database  -  Script to load the database for
       gbrowse_syn

DESCRIPTION

        The expected file format is tab-delimited (shown below):
        species1  ref1  start1  end1  strand1   cigar_string1  species2   ref2
       start2 end2 strand2  cigar_string2 coords1... | coords2...
        the  coordinate  format: pos1_species1 pos1_species2 ... posn_species1
       posn_species2   |   pos1_species2   pos1_species1   ...   posn_species2
       posn_species1,
        where  pos  is  the  matching  sequence  coordinate (ungapped) in each
       species.

AUTHOR

       Olivier Sallou (olivier.sallou (at) irisa.fr) - Man page and  packaging
       Lincoln Stein - GBrowse



  All copyrights belong to their respective owners. Other content (c) 2014-2018, GNU.WIKI. Please report site errors to webmaster@gnu.wiki.
Page load time: 0.057 seconds. Last modified: November 04 2018 12:49:43.